u/Blue-Olive

Hello everyone,

I am working with the find_circ program for circRNA detection in honey bee transcriptomes. So far, I have successfully generated the following files:

* bam

* unmapped.bam

* unmapped.fastq

* anchors.sam

* anchors.fastq

* anchors.mapped.sam

The next step should be running the following command:

```bash

python "${OUTDIR}/find_circ.py" \

-G "${GENOME}" \

"${OUTDIR}/${SAMPLE}.anchors.mapped.q20.sam" \

> "${OUTDIR}/${SAMPLE}.findcirc.txt"

```

However, every time I run this command, the program never finishes running (without any error messages). The `.findcirc.txt` file remains at 0 bytes, and there is no CPU activity associated with the process.

Does anyone recognize this issue or know what might be causing it?

Thank you in advance!