Oraon/Kurukh qpAdm results
Tested on madailabs.de using the Oraon sample A270 from publicly available data. The dataset used was AADR v66 2M.
Populations:
Target: Oraon_A270
Left: India_GreatAndaman_100BP.SG, Indus_lowAASI.SG, Vietnam_N.AG
Right: Mbuti.DG, China_Tianyuan.AG.BY.AA, Karitiana.DG, Russia_UstIshim_IUP.DG, Ami.DG, Dai.DG, Turkey_N.AG, Georgia_Kotias_Mesolithic.SG, Russia_Kostenki14_UP.SG, Iran_GanjDareh_N.SG
Raw Output:
── RESULTS_SUMMARY ──
Target: Oraon_A270
Blocks: 705 SNPs: 107,666
── RESULTS_WEIGHTS ──
# A tibble: 3 × 5
target left weight se z
<chr> <chr> <dbl> <dbl> <dbl>
1 Oraon_A270 India_GreatAndaman_100BP.SG 0.476 0.0728 6.54
2 Oraon_A270 Indus_lowAASI.SG 0.269 0.0395 6.79
3 Oraon_A270 Vietnam_N.AG 0.255 0.0440 5.80
── RESULTS_POPDROP ──
# A tibble: 7 × 14
pat wt dof chisq p f4rank India_GreatAndaman_100BP.SG Indus_lowAASI.SG Vietnam_N.AG feasible best dofdiff chisqdiff p_nested
<chr> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <lgl> <lgl> <dbl> <dbl> <dbl>
1 000 0 7 6.73 4.57e- 1 2 0.476 0.269 0.255 TRUE NA NA NA NA
2 001 1 8 42.4 1.15e- 6 1 0.885 0.115 NA TRUE TRUE 0 -12.2 1
3 010 1 8 54.6 5.27e- 9 1 0.947 NA 0.0534 TRUE TRUE 0 5.94 0
4 100 1 8 48.7 7.38e- 8 1 NA 0.475 0.525 TRUE TRUE NA NA NA
5 011 2 9 59.3 1.86e- 9 0 1 NA NA TRUE NA NA NA NA
6 101 2 9 592. 1.17e-121 0 NA 1 NA TRUE NA NA NA NA
7 110 2 9 333. 2.35e- 66 0 NA NA 1 TRUE NA NA NA NA
u/EmergencyScore9616 — 7 days ago