
Kris is exploiting loopholes again
Kris is technically "down" and is refusing to get up making Flowery unable to start a fight like he did with the Knight, so both of them get stuck in the cutscene. This buys Kris enough time for Asgore to arrive and stop Flowery. Once more, exploiting the mechanics of the Dark World to their advantage.
(Honestly, this could be Kris mimicking the King's tactic in Chapter 1 of giving up to end the fight and then using the cutscene to his advantage; he also goes "down" on his own like Kris does)
In case you missed it, this is not the first time Kris has done something this: back in the Second Sanctuary, they closed their eyes and thought about Susie while lost in the darkness to begin a cutscene - giving control back to Kris - and sent the soul to Susie's position to localize her. Just another way to show that Kris is very knowledgeable about the Dark Worlds and they most likely have even more tricks up their sleeve. I wouldn't be surprised if in the future Kris abuses more the power of cutscenes to deny us control, at least in the normal root.