r/microbiology

Isolation lactobacillus acidophilus protocol

Hey everyone, I need some help finding a protocol to isolate lactobacillus acidophilus from yogurt or dairy products so if anyone could help I’ll appreciate it

reddit.com
u/Unusual-Struggle7593 — 4 hours ago

Daily Bacteria Isolation #31🦠White Wrinkly Swarmy, Gram-(probably gram+ but stained gram- anyway), nonmotile, catalase-, oxidase-, grown and isolated from soil on NA. Daily isolation discontinuing probably until august because of family vacation in a week. It will be worth the wait.

u/SpiriRoam — 12 hours ago

Daily Bacteria Isolation #30🦠Transparent, Gram-, motile, catalase+, oxidase+, grown and isolated on NA at 28C from pond scum. TSI slant incubating. Planning to make urease test medium tomorrow. Cant do indole till after July 18th when my kovacs reagent arrives. Video separate post.

u/SpiriRoam — 1 day ago

Good resources?

Trying to finish a chart to be able to complete a dichotomous key for my second unknown assignment for micro class.

There are 12 possible microorganisms and each bench got to test on 3-4. We were told to take pictures of our resulted plates and tubes so we could use that info to fill out the chart.

Unfortunately... Not everyone took clear or good quality pictures so it's hard to tell what I'm looking at or some are labeled poorly.

Is there any reliable online source that I can use to find my answers? I've got everything I could from Bergey's, my lab atlas, and some NIH articles but I'm at a standstill now.

u/Ifoundhomeinyoureyes — 2 days ago
▲ 439 r/microbiology+1 crossposts

I need help with identifying this grazer.

Hi y’all. Attached is a video under 40X light microscopy, of an outdoor microalgal pond, . The water salinity is brackish. I notice this grazer today. Can someone help ID this.

u/Aggressive_Shock_672 — 4 days ago
▲ 7 r/microbiology+1 crossposts

This is a Heterolitonotus Rex, a fairly new unicellular ciliate discovered in 2024.

u/Thrawn911 — 2 days ago

Daily Bacteria Isolation #29🦠Purple Streptomyces, Gram+, nonmotile, filamentous, catalase+, oxidase-, grown on ISP2 agar at 28C isolated from soil on SCA 127.5mg/L cycloheximide, 40mg/L nalidixic acid. Video in comments.

u/SpiriRoam — 3 days ago
▲ 66 r/microbiology+7 crossposts

A preprint titled “Evolutionary shifts in spike glycan-binding specificity suggest a possible association with host adaptation during SARS-CoV-2 Omicron evolution”

We have published a preprint titled “Evolutionary shifts in spike glycan-binding specificity suggest a possible association with host adaptation during SARS-CoV-2 Omicron evolution” .

jxiv.jst.go.jp
u/Proof_Strawberry5086 — 3 days ago

Staining Procedure Help?

I'm having trouble figuring out how to properly do the different staining. Here's how I performed the different stains and my results in an image. The bacteria is Mycobacterium Smegmatis

Gram Staining

  1. Flood slide with Crystal Violet for 1 minute, water rinse

  2. Flood slide with Iodine (mordant), 1 minute, water rinse

  3. Acetone Alcohol drop by drop at an angle until color stops running for 3-5 seconds, water rinse

  4. Counterstain flood slide with Safranin, 1 minute, water rinse, blot dry

Acid Fast Stain

  1. Flood slide with Carbolfuschin for 10 minutes (cold method), water rinse

  2. Apply 5-6 drops of alcohol acid on slide at angle until no more color runs off, water rinse

  3. Counterstain with Methylene Blue for 1 minute, water rinse, blot dry bulbous paper

Endospore Stain

  1. Flood slide with Malachite Green and steam with blowtorch method for 5 minutes (ensure fumes and stain doesn't dry out), water rinse both sides until no more Malachite

  2. Counterstain with 0.5% Safranin for 1 minute, water rinse, blot dry

Problem

The problem I seem to have is for Acid Fast Stain (A), whether I flood the slide with alcohol acid or slowly do it drop by drop at an angle, I always seem to get rid of all the carbolfuschin and I just see the methylene blue under the microscope. The B picture is one that my classmate got for the same bacteria. My staining (A) makes it difficult to identify the bacteria because it looks blue instead of the pink/purple to identify the Mycobacterium.

Endospore, I seem to get spots of green and the rest is pink, which is confusing since this bacteria doesn't have endospores. I should only see pink here confirming the Endospore neg.

Any tips or advice?? Thank you for taking the time to help and read my post :)

u/ScoopJr — 3 days ago
▲ 44 r/microbiology+1 crossposts

Mould and fungi (pics)

These are some of my photos of fungi and slime moulds. I realise many of them aren't that great, still wouldn't hurt to share them. You may recognise some of these from Wikipedia, which is where I used some of them to brighten up biological articles. Feel free to use them for any kind of purposes. Not exactly pure microbiology (sorry).

  1. Flammulina velutipes 2. Clavaria rosea (?) 3. Mucor (?) 4. Trichia decipiens 5. No idea 6. No idea 7. Trichaptum biforme 8. Don't remember 9. Definitely mucor 10. Not so sure 11. No idea 12. Some coral fungus 13. Nidularia 14. Forgot 15. Mystery (yeast-like, some have suggested this is Aerobasidium) 16. Cordyceps sinesis 17. Again mucor (?) 18. Again trichia decipiens, mature form 19. Forgot 20. Some polypore
u/Great-Purchase-7591 — 3 days ago
▲ 4 r/microbiology+1 crossposts

Daily Bacteria Isolation #28🦠Multi-isolation Special Agar Collage day, Black(because of the media), grown and isolated on Brain Heart Infusion Agar and broth with Potassium tellurite 140 mg/L 127.5mg/L cycloheximide, 40mg/L nalidixic acid. Video of all the behind the scenes in comments.

u/SpiriRoam — 3 days ago
▲ 7 r/microbiology+1 crossposts

My thesis paper on Immunological and Microbial Functions of the foreskin in sexually transmitted infections

For my thesis in microbiology II I picked the topic above as my field of interest. I found that the foreskin has so many benefits from an immunological perspective. My paper is peer reviewed by an MD named Dr Mary Zhang MD, she was my professor and used to be a Chinese cardiologist.

researchgate.net
u/Remarkable-Fox-6470 — 3 days ago
▲ 186 r/microbiology+3 crossposts

Brachionus plicatilis in darkfield, with a visible nerve(?) connecting its eyespot

u/Thrawn911 — 5 days ago

B. spizizenii swarming nightmare on in-house TSA.

​Hey everyone, looking for some troubleshooting advice or sanity checks from fellow micro nerds.

​We are consistently getting swarming motility with Bacillus spizizenii (<100 CFU / 0.1 mL) on our in-house manufactured Tryptic Soy Agar (TSA) plates.

​We are seeing this happen on both spread plates and pour plates. In a typical 4-plate set, they are all the same organism, but the leftmost plate completely loses control and swarms across the surface.

​Info to rule out the usual suspects:

​Moisture: The plates do not have excess condensation or visible droplets.

Srain: We are locked into this specific strain for regulatory/testing requirements.

​Occurancss: This is happening across multiple scientists, different media batches, and different organism sources (both commercially purchased vials and our own frozen cryovials).

Any tweaks or recommendations would be appreciated!

u/MilkyWayAlien_ — 4 days ago

Daily Bacteria Isolation #27🦠Yellow, nonmotile, gram-, catalase-, oxidase-, grown and isolated on NA from pond scum, tsi slant had no growth

u/SpiriRoam — 5 days ago

How is coli sample taken from poo

How do you take sample out of it, what if coli bacteria isnt there where you take it but in sample it self. Do you blend it all together or sum. Prolly bad question i just was thinking this other day lol.

reddit.com
u/LonelyFrogPuddle — 5 days ago