Did Nefarious manage to do all that they could with the Great Clock? How was this improved upon in Rift Apart?
Starting out with the sheer luck of crashing onto Zanifar after the events of Deadlocked / ToD. Able to manipulate time by exploiting the Fongoids.
There’s the prelude to aCiT with the ending of Quest for Booty tying Clank & The Zoni into the supervillain‘s plans.
Quantos is a bit messed up and has a full frontal invasion at the beginning of the aCiT.
The Battle of Gimlick Valley, which is not just warped by Nefarious but also our heroes.
A bit more in-between, like the time anomalies fixed by Clank.
then, in Rift Apart, he doesn’t really manipulate time, but does use the dimensionator to travel to a universe where the heroes always lose!